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NAZARKO LAB
​

Welcome to Autophagy Lab at Georgia State University!

Our laboratory explores the selective autophagy of lipid droplets or lipophagy. This degradation pathway regulates lipid metabolism in most eukaryotic cells. Understanding molecular mechanisms of lipophagy is crucial for controlling it in humans for the prevention and treatment of many lipid accumulation diseases, such as atherosclerosis, obesity and metabolic syndrome of aging.​
NAZARKO LAB
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Team

Dr. Taras Nazarko Principal Investigator
Dr. Ankit Shroff Postdoctoral Scholar
Nimna Wijewantha Graduate Student
Colin Arrowood Graduate Student
Theresah Mensah Graduate Student
Jenish Master Graduate Student
Jada Tulloch Undergraduate Student
Former Lab Members​

​Dr. MD Golam Mostofa (Postdoctoral Scholar)
Dr. Devesh Pant (Postdoctoral Scholar)
Dr. Muhammad Rahman (Postdoctoral Scholar)
Mohammad Kabir (Graduate Student)
Roberta Torinesi (Graduate Student)
​Sterling Neill (Graduate Student)
Andeep Kour (Graduate Student)

​Masangu Musau (Undergraduate Student)
​Enrique Sanchez (Undergraduate Student)
Diego Sunga (Undergraduate Student)
Victoria Carlino (Undergraduate Student)
Akshara Erasani (Undergraduate Student)
Makayla Nudo (Undergraduate Student)
Emem Akpan ​(Undergraduate Student)
Chetna Batra (Undergraduate Student)
​Praneetha Battu (Undergraduate Student)
​Harshini Mahesh (Undergraduate Student)

Research

Our laboratory is studying lipophagy, the selective autophagy of lipid droplets (LDs). Although once perceived as inert structures, LDs have proven to be the dynamic organelles that hold many cellular functions. The LDs’ basic structure of a hydrophobic core consisting of neutral lipids and enclosed in a phospholipid monolayer allows for quick lipid accessibility for intracellular energy and membrane production. Whereas formed at the peripheral and perinuclear endoplasmic reticulum (ER), LDs are degraded either in the cytosol (by lipolysis) or in the vacuoles/lysosomes (by autophagy). Autophagy is a regulated breakdown of dysfunctional, damaged, or surplus cellular components. The selective autophagy of LDs is called lipophagy. We study LDs and their degradation by lipophagy in yeast, which proceeds via the micrometer-scale raft-like lipid domains in the vacuolar membrane. These vacuolar microdomains form during nutrient deprivation and facilitate internalization of LDs via the vacuolar membrane invagination and scission. The resultant intra-vacuolar autophagic bodies with LDs inside are broken down by vacuolar lipases and proteases. This type of lipophagy is called microlipophagy as it resembles microautophagy, the type of autophagy when substrates are sequestered right at the surface of a lytic compartment (Rahman et al., 2021).
Picture
Figure 1. Pathways that contribute to LD homeostasis in yeast. LD homeostasis is a sum of the anabolic (LD biogenesis from peripheral and perinuclear ER) and catabolic (LD degradation via cytosolic lipolysis and vacuolar lipophagy) processes. Under nutrient-rich conditions and absence of stressors, yeast cells possess a few small LDs associated with the ER. Starvation for carbon or nitrogen source induces LD biogenesis from the ER membranes, especially the nucleus–vacuole junction. The LDs grow and remain associated with the ER. During prolonged starvation, they can either be degraded in the cytosol by the LD-associated lipases or undergo microlipophagy and degradation in the vacuole by the vacuolar lipases and proteases. During lipolysis, LDs are often associated with peroxisomes (P) where fatty acids from LDs are catabolized via β-oxidation. Microlipophagy involves vacuolar docking of LDs at the newly formed raft-like microdomains followed by internalization of LDs via invagination and scission of the vacuolar membrane, and formation of the intravacuolar microlipophagic bodies that are then disintegrated by vacuolar hydrolases (Rahman et al., 2021).

Publications

  1. Wijewantha NV, Nazarko TY. Glycogen is a neutral cargo of bulk autophagy in Komagataella phaffii. Autophagy Rep. 2025;4(1):2467454.
  2. Kumar R, Arrowood C, Schott MB, Nazarko TY. Microlipophagy from Simple to Complex Eukaryotes. Cells. 2025 Jan 18;14(2):141. 
  3. Wijewantha NV, Battu P, Chen K, Kumar R, Nazarko TY. New Toolset of Reporters Reveals That Glycogen Granules Are Neutral Substrates of Bulk Autophagy in Komagataella phaffii. Int J Mol Sci. 2024 Nov 1;25(21):11772.
  4. Nazarko TY. Autophagy of glycogen is non-selective in Komagataella phaffii. Autophagy Rep. 2024;3(1):2382659.
  5. Yakout DW, Shroff A, Wei W, Thaker V, Allen ZD, Sajish M, Nazarko TY, Mabb AM. Tau regulates Arc stability in neuronal dendrites via a proteasome-sensitive but ubiquitin-independent pathway. J Biol Chem. 2024 Mar 27:107237.
  6. Wijewantha NV, Kumar R, Nazarko TY. Glycogen Granules Are Degraded by Non-Selective Autophagy in Nitrogen-Starved Komagataella phaffii. Cells. 2024 Mar 7;13(6):467.
  7. Mensah TNA, Shroff A, Nazarko TY. Ubiquitin-binding autophagic receptors in yeast: Cue5 and beyond. Autophagy. 2023 Apr 16:1-5.
  8. Shroff A, Nazarko TY. SQSTM1, lipid droplets and current state of their lipophagy affairs. Autophagy. 2023 Feb;19(2):720-723. Epub 2022 Jul 7.
  9. Kumar R, Shroff A, Nazarko TY. Komagataella phaffii Cue5 Piggybacks on Lipid Droplets for Its Vacuolar Degradation during Stationary Phase Lipophagy. Cells. 2022 Jan 10;11(2):215.
  10. Anderson R, Agarwal A, Ghosh A, Guan BJ, Casteel J, Dvorina N, Baldwin WM 3rd, Mazumder B, Nazarko TY, Merrick WC, Buchner DA, Hatzoglou M, Kondratov RV, Komar AA. eIF2A-knockout mice reveal decreased life span and metabolic syndrome. FASEB J. 2021 Nov;35(11):e21990.
  11. Shroff A, Nazarko TY. The Molecular Interplay between Human Coronaviruses and Autophagy. Cells. 2021 Aug 7;10(8):2022.
  12. Rahman MA, Kumar R, Sanchez E, Nazarko TY. Lipid Droplets and Their Autophagic Turnover via the Raft-Like Vacuolar Microdomains. Int J Mol Sci. 2021 Jul 29;22(15):8144.
  13. Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Acevedo-Arozena A et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 2021 Jan;17(1):1-382.
  14. Nazarko TY. Special Issue on "Ubiquitin and Autophagy". Cells. 2021 Jan 10;10(1):116.
  15. Kumar R, Rahman MA, Nazarko TY. Nitrogen Starvation and Stationary Phase Lipophagy Have Distinct Molecular Mechanisms. Int J Mol Sci. 2020 Nov 29;21(23):9094.
  16. Pant DC, Nazarko TY. Selective autophagy: the rise of the zebrafish model. Autophagy. 2021 Nov;17(11):3297-3305. Epub 2020 Dec 15.
  17. Zientara-Rytter K, Ozeki K, Nazarko TY, Subramani S. Pex3 and Atg37 compete to regulate the interaction between the pexophagy receptor, Atg30, and the Hrr25 kinase. Autophagy. 2018;14(3):368-384.
  18. Nazarko TY. Pexophagy is responsible for 65% of cases of peroxisome biogenesis disorders. Autophagy. 2017 May 4;13(5):991-994.
  19. Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 2016;12(1):1-222.
  20. Burnett SF, Farré JC, Nazarko TY, Subramani S. Peroxisomal Pex3 activates selective autophagy of peroxisomes via interaction with the pexophagy receptor Atg30. J Biol Chem. 2015 Mar 27;290(13):8623-31.
  21. Nazarko TY. Atg37 regulates the assembly of the pexophagic receptor protein complex. Autophagy. 2014 Jul;10(7):1348-9.
  22. Nazarko TY, Ozeki K, Till A, Ramakrishnan G, Lotfi P, Yan M, Subramani S. Peroxisomal Atg37 binds Atg30 or palmitoyl-CoA to regulate phagophore formation during pexophagy. J Cell Biol. 2014 Feb 17;204(4):541-57.
  23. Nazarko TY, Farré JC. Molecular Machines Involved in Pexophagy. In: Brocard C, Hartig A, editors. Molecular Machines Involved in Peroxisome Biogenesis and Maintenance. Vienna: Springer; 2014. Chapter 22; p.481-506. 543p.
  24. Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, Acevedo-Arozena A, Adeli K, Agholme L, Agnello M, Agostinis P, Aguirre-Ghiso JA et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy. 2012 Apr;8(4):445-544.
  25. Mijaljica D, Nazarko TY, Brumell JH, Huang WP, Komatsu M, Prescott M, Simonsen A, Yamamoto A, Zhang H, Klionsky DJ, Devenish RJ. Receptor protein complexes are in control of autophagy. Autophagy. 2012 Nov;8(11):1701-5.
  26. Nazarko VY, Nazarko TY, Farré JC, Stasyk OV, Warnecke D, Ulaszewski S, Cregg JM, Sibirny AA, Subramani S. Atg35, a micropexophagy-specific protein that regulates micropexophagic apparatus formation in Pichia pastoris. Autophagy. 2011 Apr;7(4):375-85.
  27. Manjithaya R, Nazarko TY, Farré JC, Subramani S. Molecular mechanism and physiological role of pexophagy. FEBS Lett. 2010 Apr 2;584(7):1367-73.
  28. Nazarko TY, Farré JC, Subramani S. Peroxisome size provides insights into the function of autophagy-related proteins. Mol Biol Cell. 2009 Sep;20(17):3828-39.
  29. Stasyk OV, Nazarko TY, Sibirny AA. Methods of plate pexophagy monitoring and positive selection for ATG gene cloning in yeasts. Methods Enzymol. 2008;451:229-39.
  30. Nazarko TY, Farré JC, Polupanov AS, Sibirny AA, Subramani S. Autophagy-related pathways and specific role of sterol glucoside in yeasts. Autophagy. 2007 May-Jun;3(3):263-5.
  31. Nazarko TY, Polupanov AS, Manjithaya RR, Subramani S, Sibirny AA. The requirement of sterol glucoside for pexophagy in yeast is dependent on the species and nature of peroxisome inducers. Mol Biol Cell. 2007 Jan;18(1):106-18.
  32. Krasovska OS, Babiak LI, Nazarko TY, Stasyk OG, Danysh TV, Gayda GZ, Stasyk OV, Gonchar MV, Sybirny AA. Construction of yeast Hansenula polymorpha overproducing amine oxidase as bioselective element of sensors for biogenic amines. In: El’skaya AV, Pokhodenko VD, editors. Investigations on Sensor Systems and Technologies. Kyiv: Institute of Molecular Biology and Genetics of NAS of Ukraine; 2006. p.141-8. 373p.
  33. Nazarko TY, Huang J, Nicaud JM, Klionsky DJ, Sibirny AA. Trs85 is required for macroautophagy, pexophagy and cytoplasm to vacuole targeting in Yarrowia lipolytica and Saccharomyces cerevisiae. Autophagy. 2005 Apr;1(1):37-45.
  34. Nazarko TIu, Sybirnyĭ AA. [Molecular mechanisms of autophagic peroxisome degradation in yeasts]. Ukr Biokhim Zh (1999). 2005 Mar-Apr;77(2):16-25. Ukrainian.
  35. Nazarko TY, Nicaud JM, Sibirny AA. Observation of the Yarrowia lipolytica peroxisome-vacuole dynamics by fluorescence microscopy with a single filter set. Cell Biol Int. 2005 Jan;29(1):65-70.
  36. Nazarko T, Mala M, Nicaud JM, Sibirny A. Mutants of the yeast Yarrowia lipolytica deficient in the inactivation of peroxisomal enzymes. Visnyk of L’viv Univ. Biology series. 2004; 35:128-36.
  37. Stasyk OV, Nazarko VY, Pochapinsky OD, Nazarko TY, Veenhuis M, Sibirny AA. Identification of intragenic mutations in the Hansenula polymorpha PEX6 gene that affect peroxisome biogenesis and methylotrophic growth. FEMS Yeast Res. 2003 Nov;4(2):141-7.
  38. Stasyk OV, Nazarko TY, Stasyk OG, Krasovska OS, Warnecke D, Nicaud JM, Cregg JM, Sibirny AA. Sterol glucosyltransferases have different functional roles in Pichia pastoris and Yarrowia lipolytica. Cell Biol Int. 2003;27(11):947-52.
  39. Ubiyvovk VM, Nazarko TY, Stasyk OG, Sohn MJ, Kang HA, Sibirny AA. GSH2, a gene encoding gamma-glutamylcysteine synthetase in the methylotrophic yeast Hansenula polymorpha. FEMS Yeast Res. 2002 Aug;2(3):327-32.
  40. Ubiĭvovk VM, Nazarko TIu, Stasyk EG, Sibirnyĭ AA. [Cloning of the GSH1 and GSH2 genes complementing the defective biosynthesis of glutathione in the methylotrophic yeast Hansenula polymorpha]. Mikrobiologiia. 2002 Nov-Dec;71(6):829-35. Russian.
  41. Nazarko VY, Pochapinsky OD, Nazarko TY, Stasyk OV, Sibirny AA. Isolation and characterization of cold sensitive pex6 mutant of the methylotrophic yeast Hansenula polymorpha. Biopolymers and Cell. 2002; 18(2):131-4.
  42. Nazarko TY, Mala MJ, Sibirny AA. Development of the plate assay screening procedure for isolation of the mutants deficient in inactivation of peroxisomal enzymes in the yeast Yarrowia lipolytica. Biopolymers and Cell. 2002; 18(2):135-8.

News

  • 2025-04-04 - Nimna has successfully defended her dissertation on glycogen autophagy. Congrats, Dr. Wijewantha!
  • 2025-03-27 - Taras gave a talk on the autophagy of glycogen at GSU's Biology Seminar.
  • 2025-02-28 - Taras presented a poster on eIF2A at the 2025 Suddath Symposium at Georgia Tech.
  • 2025-02-19 - Nimna and Taras published the Commentary Article on Glycogen in Autophagy Reports.
  • 2025-02-05 - Theresah presented a poster at the 3rd Annual Graduate Conference at GSU.
  • 2025-01-31 - Praneetha was accepted to the Medical College of Georgia. Congrats, Praneetha!
  • 2025-01-30 - Preprint of the collaborative article with Khalimonchuk lab on mitochondrial Mdm38/LETM1 is online.
  • 2025-01-18 - Colin and Taras published the first Review Article focused entirely on Microlipophagy in Cells.
  • 2024-11-01 - Nimna, Praneetha and Taras published the Research Article on Glycogen Autophagy in K. phaffii in IJMS.
  • 2024-09-27 - Preprint of our Article on the New Toolset of Reporters for Glycogen Autophagy in K. phaffii is online.
  • 2024-08-15 - Taras joined the Molecular Biology Section of the Editorial Board of IJMS.
  • 2024-08-07 - Harshini and Jada presented their posters at the 2024 Summer Undergraduate Research Symposium.
  • 2024-07-27 - Taras published the Commentary Article on Glycogen Autophagy in Autophagy Reports.
  • 2024-07-01 - Ankit started a new position as an Instructor at the University of Nebraska Medical Center. Congrats, Ankit!
  • 2024-05-16 - Colin received the 1st place award for his poster presentation at the MBD Retreat 2024. Congrats, Colin!
  • 2024-05-16 - Colin and Nimna presented their posters at the Molecular Basis of Disease (MBD) Retreat 2024.
  • 2024-04-29 - Harshini and Jada received the 2024 MBD Summer Undergraduate Research Fellowships. Congrats!
  • 2024-03-27 - Ankit and Taras co-authored the Research Article on the Role of Tau in Arc Stability with Mabb Lab.
  • 2024-03-27 - Nimna received the Ahmed T. Abdelal Fellowship in Molecular Genetics and Biotechnology. Congrats!
  • 2024-03-25 - Taras gave a talk on the autophagy of glycogen granules at the Pichia 2024 meeting in San Diego, California.
  • 2024-03-14 - Taras presented a poster on the role of eIF2A in lipophagy at the GRC on Autophagy in Lucca (Barga), Italy. 
  • 2024-03-07 - Nimna and Taras published their first Research Article on Glycogen Autophagy in K. phaffii in Cells.
  • 2024-01-08 - Preprint of our Article on the Type of Autophagy for the Turnover of Glycogen Granules in K. phaffii is online.
  • 2023-12-03 - Nimna presented a poster on Glycogen Autophagy at the Keystone Symposium on Autophagy and Disease.
  • 2023-11-10 - Taras gave a talk on the Ubiquitin-Binding Autophagic Receptors in Lipophagy at GSU's Chemistry Seminar.
  • 2023-10-26 - Nimna presented a poster on the Autophagic Degradation of Glycogen Granules at 2023 WIA Symposium.
  • 2023-10-06 - Nimna and Theresah presented their posters at the 2023 Graduate Conference at GSU.
  • 2023-09-25 - Nimna received the GSSP Steven & Lisa Asplundh Family Foundation Scholarship. Congrats, Nimna!
  • 2023-09-22 - Ankit gave a talk on yeast eIF2A and Fun12/eIF5B at the 2nd Annual Postdoctoral Symposium at GSU.
  • 2023-08-25 - Taras gave a talk on the Ubiquitin-Binding Autophagic Receptors in Lipophagy at GSU's Biology Seminar.
  • 2023-04-21 - Chetna received William G. Nolan Memorial Scholarship Award & Undergraduate Research Award. Congrats!
  • 2023-04-21 - Roberta received the Outstanding Graduate Student Intern Award. Congrats, Roberta!
  • 2023-04-16 - Theresah, Ankit and Taras published a minireview on Ubiquitin-binding Autophagic Receptors in Yeast.
  • 2023-04-11 - Chetna received 2nd Place Award for Outstanding Poster Presentation at GSURC 2023. Congrats, Chetna!
  • 2023-04-11 - Chetna and Praneetha presented posters on their Honors Thesis projects at the GSURC 2023 conference.
  • 2023-04-04 - Theresah received the Ahmed T. Abdelal Fellowship in Molecular Genetics and Biotechnology. Congrats!
  • 2023-04-04 - Taras gave seminar on Ubiquitin-Binding Autophagic Receptors in Lipophagy at University of South Carolina 
  • 2023-03-31 - Our preprint Ubiquitin-binding Autophagic Receptors in Yeast reached the milestone of 100 times download!
  • 2023-03-30 - The 2021 article on eIF2A-knockout mice in the FASEB Journal was recognized as Top Downloaded Article.
  • 2023-01-05 - Preprint of our Review Article on Ubiquitin-binding Autophagic Receptors in Yeast is online.
  • 2022-12-15 - Preprint of collaborative Article on the Role of Tau in Regulating the Stability of Arc with Mabb Lab is online.
  • 2022-11-15 - Nimna and Chetna presented posters at the WIA 3rd Annual Symposium Webinar.
  • 2022-09-23 - Ankit co-organized and presented a poster at the GSU Postdoctoral Symposium.
  • 2022-09-09 - Nazarko lab presented at the Bio for Breakfast meeting: "What is brewing in the yeast autophagy lab?" :) 
  • 2022-08-10 - Nimna gave a talk and Colin presented a poster at the 2022 Molecular Basis of Disease Annual Retreat.
  • 2022-08-05 - Ankit, Nimna and Colin presented posters at the 41st Annual Biological Stain Commission Conference.
  • 2022-07-07 - Ankit and Taras published a minireview on SQSTM1, lipid droplets and lipophagy.
  • 2022-06-24 - Taras gave a Summer Biology Seminar on Lipid droplets and Lipophagy in GSU's Department of Biology.
  • 2022-03-19 - Ankit gave a talk on Yeast eIF2A as a Novel Regulator of Lipophagy at the GRS on Autophagy in Ventura, CA.
  • 2022-03-11 - Taras gave a Spring Biology Seminar on Cue5 and Lipophagy in the Department of Biology at GSU.
  • 2022-01-10 - Ankit and Taras published the Research Article on K. phaffii Cue5 and Stationary Phase Lipophagy.
  • 2021-12-16 - Preprint of our Research Article on K. phaffii Cue5 and Stationary Phase Lipophagy is online.
  • 2021-10-19 - Taras co-authored the Article on Phenotypic Characterization of eIF2A Knockout Mice with Komar Lab.
  • 2021-09-02 - Taras was promoted to Autophagy Section Editor in the Editorial Board of Cells.
  • 2021-08-07 - Ankit and Taras published the Review Article on Human Coronaviruses and Autophagy.
  • 2021-07-29 - Arif, Enrique and Taras published the Review Article on Lipid Droplets and Lipophagy in Yeast.
  • 2021-05-01 - Taras published his Special Issue of Cells as a Book "Ubiquitin and Autophagy".
  • 2021-04-02 - Colin received the MBD Fellowship. Congrats, Colin!
  • 2021-03-30 - Nimna presented a poster on her Glycophagy project at the Pichia2021 Virtual Conference.
  • 2021-03-30 - Ankit and Taras gave talks on Lipophagy projects at the Pichia2021 Virtual Conference.
  • 2021-03-26 - Chetna received the Goldwater Scholarship. Congrats, Chetna!
  • 2021-02-08 - Autophagy community (including our lab) published the 4th Guidelines for Monitoring Autophagy.
  • 2021-02-05 - Taras joined the Editorial Board of Cells as Topic Editor.
  • 2021-01-10 - Taras published Editorial to the Special Issue of Cells on "Ubiquitin and Autophagy".
  • 2020-12-15 - Devesh and Taras published the lab's 1st Review Article on the Selective Autophagy in Zebrafish.
  • 2020-11-29 - Arif and Taras published the lab's 1st Research Article on Mechanisms of Lipophagy in K. phaffii.
  • 2020-11-11 - Chetna gave a talk on her UAP project at the Fall 2020 STEM Conference at GSU.
  • 2020-09-23 - Taras gave a talk on SARS-CoV-2 and Autophagy at Emory University's webinar on COVID-19.
  • 2020-09-01 - Ankit and Taras presented posters on Lipophagy at the 2020 CSHL's meeting on Translational Control.
  • 2020-07-01 - Taras received the Research Initiation Grant from GSU to open a new research direction on Glycophagy.
  • 2020-04-20 - Victoria presented a poster on her Honors Thesis project at the GSURC 2020 conference.
  • 2020-03-20 - Nimna received the MBD Fellowship. Congrats, Nimna!
  • 2020-03-18 - Preprint of our 1st Research Article on Mechanisms of Lipophagy in K. phaffii is online.
  • 2020-01-20 - Taras initiated the Special Issue of Cells on "Ubiquitin and Autophagy".
  • 2020-01-17 - Taras gave a Graduate Research Seminar on Lipophagy in the Department of Biology at GSU.
  • 2020-01-13 - Taras gave a Graduate Research Seminar on Lipophagy at Cleveland State University.
  • 2019-12-13 - Taras gave a talk on Lipophagy in Zebrafish Macrophages at the 1st SERZC in Miami, Florida.
  • 2019-11-04 - Taras presented a poster on Lipophagy in Yeast and Zebrafish at the 9th ISA in Taipei, Taiwan.
  • 2019-10-15 - Taras gave a Graduate Research Seminar on Lipophagy at Rowan University.
  • 2019-01-25 - Devesh gave a Graduate Research Seminar on Leukodystrophy in the Department of Biology at GSU.
  • 2018-08-01 - The first day of Nazarko Lab at GSU!

Contact

We are always looking for bright and motivated students and scholars.
Please reach out to us if you want to join the Nazarko Lab:

​Dr. Taras Nazarko
​Petit Science Center (PSC), Room 620
100 Piedmont Ave SE
Atlanta, GA 30303
Phone: 404-413-5349
E-mail: [email protected]
​
Copyright © Nazarko Lab 2021. All rights reserved.
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